MmuEX6105289 @ mm10
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131186949-131189130:+
Coord C1 exon
chr2:131186949-131187380
Coord A exon
chr2:131188106-131188227
Coord C2 exon
chr2:131189079-131189130
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTCTCCTTTCCTAGTGA
3' ss Score
8.82
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTATTTTTCGAATATATAAGGAGGTGGAGGTGGCAGCTGCCCAGCTCGGCGTCCTCCCCTCCCTTCCTCCCCACATCCCTCTCCTCACTCCCAGGCCCATTGCTCTTCCTCCCTCCCTTCCCTCCCTCCTTCCCCTCACCCCAGGCTCACTCTCGGAGCTGAGCCAGCTGGGTCGGCGTCTGCTGGCCGCTGTACTGTGGCCCTCTAGCTAGCCTTTGCCCGCCCCGCCACGATGGAGGTACCCCTGCAGAAGTCTGCGCCGGGTTCAGCTCTCAGTCCTGCCCGCGTGCTGGGTGGCATTCAGCGGCCGCGCCACCTCTCGGTCTTTGAGTTTGAGTCTGATGGCTTCCTGGGGTCTCCGGAGCCTACAGCTTCCTCCTCTCCGGTTACCACTCTTACACAGACCATGCACAACCTCGCTGGGCTCGGCAG
Seq A exon
TGAGCCTCCAAAAGCTCAAGTAGGAAGCCTGTCGTTCCAGAACAGGCTGGCAGACCTATCCCTGTCCAGGCGCACCTCTGAGTGCTCCCTGTCATCTGAGTCCTCAGAATCTTCGGATGCAG
Seq C2 exon
GTCTGTGCATGGACTCCCCCAGCCCTGTGGACCCGCAGATGGCAGAGCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.637 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF066178=M-inducer_phosp=PU(5.2=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTCTAGCTAGCCTTTG
R:
GGGGGAGTCCATGCACAGA
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types