HsaEX6077249 @ hg38
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr20:13870141-13877588:-
Coord C1 exon
chr20:13877520-13877588
Coord A exon
chr20:13876038-13876115
Coord C2 exon
chr20:13870141-13870203
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATTTTTCTTCCTAGATG
3' ss Score
11.11
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAAGCATTACACTACTTCTTAAAGGCAGCAAAGGCCGGGAGTGCAAATGCCATGGCATTTATAGGAAAG
Seq A exon
ATGTATTTAGAGGGGAATGCTGCCGTGCCGCAAAATAACGCTACTGCCTTCAAGTACTTTTCCATGGCAGCCAGTAAG
Seq C2 exon
GGCAATGCAATCGGCCTTCATGGGCTTGGTCTTCTTTACTTTCATGGAAAAGGAGTTCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'23-26,'23-23,24-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACACTACTTCTTAAAGGCAGC
R:
CAGGGGAACTCCTTTTCCATGA
Band lengths:
129-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains