BtaEX0031826 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7590357-7596578:-
Coord C1 exon
chr13:7596510-7596578
Coord A exon
chr13:7595030-7595107
Coord C2 exon
chr13:7590357-7590419
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTTTTTTGTAGATG
3' ss Score
11.14
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAAGCATTATACTACTTCTTAAAGGCTGCAAAAGCTGGGAGCGCAAACGCTATGGCATTTATAGGAAAG
Seq A exon
ATGTATTTAGAAGGGAATGCTGCAGCACCACAAAATAATGCTACTGCTTTCAAATACTTTTCTATGGCAGCTAGTAAG
Seq C2 exon
GGCAATGCAATTGGTCTTCATGGGCTCGGTCTTCTTTATTTTTATGGGAAAGGAGTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTATACTACTTCTTAAAGGCTG
R:
CTTTCCCATAAAAATAAAGAAGACCG
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development