RnoEX0079197 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134296602-134304826:-
Coord C1 exon
chr3:134304758-134304826
Coord A exon
chr3:134303281-134303358
Coord C2 exon
chr3:134296602-134296664
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTTTTTCATCTGTAGATG
3' ss Score
10.81
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAGGCGTTATACTACTTTCTAAAGGCAGCAAAAGCTGGGAGTGCAAATGCCATGGCATTTATAGGAAAG
Seq A exon
ATGTATTTAGAGGGGAACGCTGCTGCACCACAAAATAATGCCACTGCCTTCAAATACTTCTCCATGGCGGCCAGCAAG
Seq C2 exon
GGCAATGCAATTGGTCTTCATGGACTCGGTCTCCTTTACTTCCATGGAAAAGGTGTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(38.2=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTATACTACTTTCTAAAGGCAGC
R:
CACAGGAACACCTTTTCCATGGA
Band lengths:
129-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]