GgaEX1051571 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40227971-40230024:-
Coord C1 exon
chr5:40229956-40230024
Coord A exon
chr5:40228749-40228826
Coord C2 exon
chr5:40227971-40228033
Length
78 bp
Sequences
Splice sites
3' ss Seq
TAATGATTTTTTTCTTTCAGATG
3' ss Score
10.13
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
CGCGCATTTGAGTACTTTAATCAAGCAGCTAATGCTGGCAACTCACATGCCATGGCCTTTCTAGGAAAG
Seq A exon
ATGTACTCAGAAGGAAGTGATGTTGTACCTCAGAATAATGAAACAGCTCTTCAGTATTTCAAGAAAGCTGCTGATATG
Seq C2 exon
GGTAATCCAGTTGGGCAGAGTGGATTAGGAATGGCTTACCTCTATGGAAGAGGTGTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'16-19,'16-16,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCATTTGAGTACTTTAATCA
R:
CACTGGAACACCTCTTCCATAGA
Band lengths:
132-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]