BtaEX6055347 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93918108-93921344:-
Coord C1 exon
chr10:93921276-93921344
Coord A exon
chr10:93919544-93919621
Coord C2 exon
chr10:93918108-93918170
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTGTCTGTTTTCCAGATG
3' ss Score
9.34
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGAGCATTTGACTACTTCAACTTAGCAGCGAATGCTGGCAATTCCCACGCCATGGCCTTCTTGGGAAAG
Seq A exon
ATGTACTCAGAAGGAAGTGATATTGTACCTCAGAGTAACGAGACGGCTCTTCACTACTTTAAAAAGGCTGCTGACATG
Seq C2 exon
GGCAACCCAGTTGGACAGAGTGGGCTTGGAATGGCTTACCTCTACGGGAGAGGAGTTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACTACTTCAACTTAGCAGC
R:
ACTTGAACTCCTCTCCCGTAGA
Band lengths:
128-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]