MmuEX6082370 @ mm9
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:93055722-93058550:-
Coord C1 exon
chr12:93058482-93058550
Coord A exon
chr12:93056659-93056736
Coord C2 exon
chr12:93055722-93055784
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATCGGGGCTGTTTTTCCAGATG
3' ss Score
6.54
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGAGCGTTTGACTACTTCAACTTAGCAGCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAG
Seq A exon
ATGTATTCTGAAGGAAGTGACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATG
Seq C2 exon
GGCAACCCCGTGGGACAGAGCGGGCTTGGAATGGCCTACCTCTACGGAAGAGGCGTTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'15-15,'15-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTTGACTACTTCAACTTAGCA
R:
ACTTGAACGCCTCTTCCGTAG
Band lengths:
129-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: