RnoEX0079187 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115583867-115586677:-
Coord C1 exon
chr6:115586609-115586677
Coord A exon
chr6:115584810-115584887
Coord C2 exon
chr6:115583867-115583929
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATCGGGGGCTGTTTTCCAGATG
3' ss Score
5.57
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGAGCGTTTGACTACTTCAACTTAGCAGCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAG
Seq A exon
ATGTATTCTGAGGGAAGTGACATCGTGCCTCAGAGTAACGAGACGGCACTTCACTACTTCAAGAAAGCTGCTGACATG
Seq C2 exon
GGCAACCCGGTGGGACAGAGCGGACTTGGAATGGCCTACCTCTATGGAAGAGGAGTTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'24-21,'24-20,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTTGACTACTTCAACTTAGCA
R:
CTCTTCCATAGAGGTAGGCCA
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]