HsaEX6072405 @ hg19
Exon Skipping
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81955596-81958892:-
Coord C1 exon
chr14:81958824-81958892
Coord A exon
chr14:81956732-81956809
Coord C2 exon
chr14:81955596-81955658
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATTGGGATCTGTTTTCCAGATG
3' ss Score
7.16
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
AGAGCATTTGACTACTTCAATTTAGCAGCAAATGCTGGCAATTCACATGCCATGGCCTTTTTGGGAAAG
Seq A exon
ATGTATTCGGAAGGAAGTGACATTGTACCTCAGAGTAATGAGACAGCTCTCCACTACTTTAAGAAAGCTGCTGACATG
Seq C2 exon
GGCAACCCAGTTGGACAGAGTGGGCTTGGAATGGCCTACCTCTATGGGAGAGGAGTTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.1=56.5),PF082387=Sel1=PU(21.6=34.8)
A:
PF082387=Sel1=FE(67.6=100)
C2:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACTACTTCAATTTAGCAGC
R:
ACTTGAACTCCTCTCCCATAGA
Band lengths:
128-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)