HsaEX6081974 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112685406-112747279:-
Coord C1 exon
chr8:112747179-112747279
Coord A exon
chr8:112689868-112690042
Coord C2 exon
chr8:112685406-112685732
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTCCAGAAATTGAGAAA
3' ss Score
-11.56
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TGAAATTTGAACTTCACCAGGGCTACGACTTTTACAGGAAAAAACAATGAAGCAACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAA
Seq A exon
AAAGAAAGTTGTGGTGATCCTGGTACACCCTTATATGGAATTAGAGAAGGCGATGGATTTTCTAATCGTGATGTTTTAAGGTTTGAATGCCAGTTTGGGTTTGAATTAATTGGAGAGAAATCCATTGTTTGTCAAGAGAATAACCAATGGTCTGCAAACATACCCATCTGTATCT
Seq C2 exon
TTCCCTGCCTGTCTAACTTTACTGCACCAATGGGAACAGTTCTTTCTCCTGATTACCCAGAAGGGTATGGAAATAATTTAAATTGCATCTGGACGATAATCTCTGATCCAGGGAGCCGGATACATCTTTCTTTCAATGACTTTGACCTGGAATCCCAGTTTGATTTCCTTGCTGTTAAAGATGGTGACTCTCCAGAATCCCCAATTCTTGGAACCTTTACTGGGGCTGAGGTGCCTTCCCATCTTACTAGTAATAGTCACATACTGCGATTGGAATTTCAGGCTGACCACTCAATGTCAGGACGTGGCTTTAACATCACTTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'31-40,'31-39,32-40
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NA
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTTCACCAGGGCTACGA
R:
TGGGATTCCAGGTCAAAGTCA
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains