DreEX6042845 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47982972-47991119:-
Coord C1 exon
chr16:47991007-47991119
Coord A exon
chr16:47990718-47990900
Coord C2 exon
chr16:47982972-47983298
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCCATGCTCCCGTCTCTCAGAAA
3' ss Score
8.45
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTTAACAGGCAGTTTCGTCCCCGACCTCATCGTCAGTATGACCCATCAAATGTGGCTGCATTTGCAGTCTGATGAAAGTGTGGGCTCTATTGGCTTTAAGATCAACTATAAAG
Seq A exon
AAATTGACAAGGAAAGTTGCGGAGATCCCGGGATCCCTCTGTACGGCCTGCGAGAGGGCGGAGGTTTCTCTAACGGAGGCGTGCTGCGCTTTGAATGCCAGTTCGGATTCGAGCTCATCGGCGAACGAATGATTTCCTGCCAGAATAACAATCAGTGGTCTGCTAACATCCCTATCTGTATAT
Seq C2 exon
TTCCCTGTATGTCTAACTTCACGGCCGCGATGGGAACCGTTCTGTCCCCGGACTATCCAGAGGGTTATGGGAACAACCTGAACTGCGTCTGGCTGATCATCGCTGAAGCGGGCAGCCGCATCCATCTGGCTTTCAATGACTTCGACCTGGAGCCTCCGTATGACTTCCTGACGGTGAGGGACGGGGATTTGGCGGACGCTGTGGTGCTGGGACGCTTCTCCGGTGCGGAAGTGCCATCTCACCTCACCAGCAATTCCAACATTCTCCAGCTGGAGTTTCAAGCTGATCACTCCATGTCTGGCCGAGGTTTCAACATCACATACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'5-21,'5-13,13-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.0=92.3)
A:
PF0008415=Sushi=WD(100=87.1)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATATTCCTGTGCCAATAGTGAGCA
R:
ACGCCCGCACGCACATAT
Band lengths:
194-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]