DreEX6042844 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47990718-47999951:-
Coord C1 exon
chr16:47999897-47999951
Coord A exon
chr16:47991007-47991119
Coord C2 exon
chr16:47990718-47990900
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCTCTGCATTGACAGCTT
3' ss Score
6.84
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CATTGACTGTCGGAGACGGCGGAGAAGTTGGAGACTCCAAAACAATCATACAAGT
Seq A exon
CTTAACAGGCAGTTTCGTCCCCGACCTCATCGTCAGTATGACCCATCAAATGTGGCTGCATTTGCAGTCTGATGAAAGTGTGGGCTCTATTGGCTTTAAGATCAACTATAAAG
Seq C2 exon
AAATTGACAAGGAAAGTTGCGGAGATCCCGGGATCCCTCTGTACGGCCTGCGAGAGGGCGGAGGTTTCTCTAACGGAGGCGTGCTGCGCTTTGAATGCCAGTTCGGATTCGAGCTCATCGGCGAACGAATGATTTCCTGCCAGAATAACAATCAGTGGTCTGCTAACATCCCTATCTGTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'5-21,'5-12,12-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATATTCCTGTGCCAATAGTGAGCA
R:
ACGCCCGCACGCACATAT
Band lengths:
194-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]