GgaEX1017857 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:133036099-133083539:-
Coord C1 exon
chr2:133083436-133083539
Coord A exon
chr2:133074762-133074874
Coord C2 exon
chr2:133036099-133036281
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCTATCTGTAGGTT
3' ss Score
11.46
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCATTCAGATAAATTTTGAAGAATTTGATCTGGAGATTGGCTATGACACATTGACAATTGGTGATGGAGGAGAAGTGGGTGATCCTAAAACCATGCTTCAAGT
Seq A exon
GTTAACTGGGAGCTTTGTACCAGACTTAATTGTAAGCATGAGCAATCAGATGTGGTTGCATCTTCAGACGGATGAAAGTGTGGGATCAGTTGGTTTCAAGGTTAATTACAAAG
Seq C2 exon
AAATTGAAAAGGAAAGCTGTGGTGATCCTGGAACACCGTTGTATGGCATCAGAGAAGGAGATGGATTTTCCAATCGAGATGTTTTAAGATTTGAGTGTCATTTTGGATTTGAATTAATTGGAGAGAAATCTATAATTTGCCAAGAAAACAATCAGTGGTCTGCAAACATACCAATTTGTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'12-16,'12-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGATTGGCTATGACACA
R:
TGTTTGCAGACCACTGATTGT
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]