MmuEX6053495 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47981873-48161127:-
Coord C1 exon
chr15:48161024-48161127
Coord A exon
chr15:48151561-48151673
Coord C2 exon
chr15:47981873-47982011
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCTTCAATCTCTTTTTCAGGCT
3' ss Score
9.99
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCATCCAGATAAACTTTGAAGAATTTGATTTGGAGATTGGCTATGACACGTTGACTATTGGTGATGGAGGTGAAGTTGGAGACCCAAGGACTGTGCTTCAGGT
Seq A exon
GCTAACTGGAAGCTTTGTGCCAGACCTGATAGTGAGCATGAGAAGCCAAATGTGGCTCCATCTTCAAACAGATGAAAGTGTTGGATCTGTTGGCTTCAAGGTTAACTACAAAG
Seq C2 exon
CTCCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTAATTCTCTCACCAGGATGGCCAGGATACTACAAAGACTCTTTGAATTGTGAGTGGGTGATTGAAGCTGAACCTGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'52-23,'52-22,53-23=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0043115=CUB=PU(41.5=93.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATTTGATTTGGAGATTGGCT
R:
TGTAATTTTGATAGAGTGTCCAGGT
Band lengths:
218-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types