DreEX6074393 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44943938-44969573:-
Coord C1 exon
chr19:44969470-44969573
Coord A exon
chr19:44965332-44965444
Coord C2 exon
chr19:44943938-44944120
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTTGTGTTCTGTAGTCT
3' ss Score
9.03
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGATTCAGATTAACTTTGAGGACTTTGACCTGGAGCTGGGCTACGATACGCTAACCATCGGTGACGGAGGGGAAGTTGGAGACCCCAAAACCATCCTGCAAGT
Seq A exon
TCTGACTGGAAGCTTTGTCCCAGACCTGATCGTCAGCATGACCCATCAGATGTGGCTTCACCTTCAGTCTGATGAAAGCGTGGGCTCCATAGGCTTCAAGATCAACTACAAAG
Seq C2 exon
AAATCGACAAGGAGAGCTGTGGGGACCCAGGCACCCCGCTGTATGGGATGAGGGAAGGAGACGGCTTCTCCAACGGTGACATGCTTCGCTTTGAGTGCCAGTTTGGGTTTGAGCTCATTGGAGAGAAAACAATATCCTGTCAGAACAACAACCAGTGGTCTGCCAACATCCCCATCTGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=94.7)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTACGATACGCTAACCA
R:
CAGATGGGGATGTTGGCAGAC
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]