HsaEX6081973 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112689868-112829789:-
Coord C1 exon
chr8:112829686-112829789
Coord A exon
chr8:112800162-112800274
Coord C2 exon
chr8:112689868-112690050
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCATCTCTTTTTAGGCT
3' ss Score
11.89
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTATCCAGATAAATTTTGAAGAATTTGATCTGGAGATTGGCTATGATACCTTGACAATTGGCGATGGGGGCGAAGTTGGAGATCCTAGGACAGTGCTCCAAGT
Seq A exon
GCTGACTGGAAGCTTTGTACCAGACTTGATAGTGAGCATGAGTAGCCAAATGTGGCTGCACCTTCAAACGGACGAAAGTGTTGGATCTGTTGGTTTCAAGGTTAACTACAAAG
Seq C2 exon
AAATTGAGAAAGAAAGTTGTGGTGATCCTGGTACACCCTTATATGGAATTAGAGAAGGCGATGGATTTTCTAATCGTGATGTTTTAAGGTTTGAATGCCAGTTTGGGTTTGAATTAATTGGAGAGAAATCCATTGTTTGTCAAGAGAATAACCAATGGTCTGCAAACATACCCATCTGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'28-38,'28-33,30-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGATACCTTGACAATTGGCG
R:
ACAGATGGGTATGTTTGCAGAC
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains