MmuEX6053495 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47842590-47992673:-
Coord C1 exon
chr15:47992570-47992673
Coord A exon
chr15:47983107-47983219
Coord C2 exon
chr15:47842590-47842772
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCTTCAATCTCTTTTTCAGGCT
3' ss Score
9.99
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCATCCAGATAAACTTTGAAGAATTTGATTTGGAGATTGGCTATGACACGTTGACTATTGGTGATGGAGGTGAAGTTGGAGACCCAAGGACTGTGCTTCAGGT
Seq A exon
GCTAACTGGAAGCTTTGTGCCAGACCTGATAGTGAGCATGAGAAGCCAAATGTGGCTCCATCTTCAAACAGATGAAAGTGTTGGATCTGTTGGCTTCAAGGTTAACTACAAAG
Seq C2 exon
AAATTGAGAAGGAAAGCTGTGGCGATCCTGGCACACCGTTATATGGAATTAGAGAAGGCGATGGTTTTTCTAATCGTGATGTTTTAAGGTTTGAATGCCAGTTTGGGTTTGAATTAATTGGAGAGAAATCCATTGTTTGTCAAGAGAATAACCAATGGTCTGCAAATATACCCATCTGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'24-14,'24-12,25-14=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATTGGCTATGACACGT
R:
TGGGTATATTTGCAGACCATTGGT
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: