MmuEX6053498 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47981873-48004967:-
Coord C1 exon
chr15:48004641-48004967
Coord A exon
chr15:48001467-48001661
Coord C2 exon
chr15:47981873-47982011
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTCTCCTTTTTAAGCAT
3' ss Score
9.44
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TTCCTTGCCTCTCTAACTTCACTGCACCAATGGGAACAGTCCTTTCCCCTGATTATCCAGAAGGTTATGGAAATAATTTAAATTGTATCTGGACAATAATCTCTGATCCAGGAAGCCGGATCCACCTTTCCTTCAATGACTTTGATCTGGAATCTCAATTTGACTTTCTTGCTGTTAAAGATGGTGACTCACCAGATTCCCCAATTCTGGGAACCTTTACTGGGGCAGAGGTGCCTTCCCATCTTACTAGTAACAGCCACATACTGCGACTGGAATTTCAAGCTGACCACTCTATGTCAGGGCGTGGCTTCAACATCACATACAATA
Seq A exon
CATTTGGACATAATGAATGCCCAGATCCTGGAATACCCATCAATGCTCGTCGCTTTGGAGACAACTTTCAATTGGGCAGTTCTATTTCAGTTATTTGTGAAGAAGGGTTTATTAAAACCCAGGGAACAGAAACAATTACATGCATTCTGATGGATGGAAAAGTAATGTGGAGTGGACCAATTCCAAGATGTGGAG
Seq C2 exon
CTCCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTAATTCTCTCACCAGGATGGCCAGGATACTACAAAGACTCTTTGAATTGTGAGTGGGTGATTGAAGCTGAACCTGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'55-27,'55-25,56-27=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAAACTCACCTGGTCC
R:
GTAGTCCCAGGCCCTTCTCTC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types