BtaEX0010219 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:53905433-53928476:+
Coord C1 exon
chr14:53905433-53905759
Coord A exon
chr14:53910041-53910235
Coord C2 exon
chr14:53928338-53928476
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTGCTGTTCTCAAGCAT
3' ss Score
5.34
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TTCCTTGCCTCTCTAACTTTACTGCACCAATGGGAACAGTCCTTTCTCCTGATTATCCAGAAGGGTATGGAAATAATTTAAATTGCATCTGGACAATAATCTCTGATCCAGGAAGTCGAATACACCTTTCTTTCAATGACTTTGATCTGGAATCCCAGTTTGACTTCCTTGCTGTTAAAGACGGGGACTCTCCAGACTCCCCAGTTCTTGGAACCTTTACTGGGGCTGAAGTGCCTTCTCATCTTACTAGTAATAGTCATATACTACGGTTGGAATTTCAAGCTGACCACTCAATGTCAGGACGTGGCTTTAACATCACTTACAACA
Seq A exon
CATTTGGACATAATGAGTGTCCTGATCCTGGAATACCAATCAATGCAAGGAGATTTGGGGACAACTTTCAATTAGGAAGTTCAATTTCAGTTATTTGTGAAGAAGGATTTATTAAAACCCAGGGAACAGAAACAATTACATGTATACTAATGGATGGAAAAGTGATGTGGAGTGGCCCAATTCCAAGATGTGGAG
Seq C2 exon
CTCCATGTGGTGGCCATTTTTCAGCTCCCAGTGGATTGATTCTGTCACCAGGATGGCCCGGATACTATAAAGACTCTCTGAATTGTGAATGGGTGATTGAAGCTGAACCAGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCAGACTCCCCAGTTC
R:
TGGTTCAGCTTCAATCACCCA
Band lengths:
251-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development