RnoEX0003312 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87141439-87165201:-
Coord C1 exon
chr7:87164875-87165201
Coord A exon
chr7:87161942-87162136
Coord C2 exon
chr7:87141439-87141577
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTCTCCTTTGAAAGCAT
3' ss Score
4.97
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TTCCTTGCCTCTCTAACTTCACTGCACCGATGGGAACAGTCCTTTCCCCTGATTATCCAGAAGGCTATGGAAATAATTTAAATTGTATCTGGACAATAATCTCTGATCCAGGGAGCCGGATCCACCTTTCCTTCAATGATTTTGATCTAGAATCTCAATTTGACTTTCTTGCTGTTAAAGATGGTGACTCGCCAGATTCCCCTATTCTGGGAACCTTTACTGGGGCAGAGGTACCTTCCCACCTCACTAGTAACAGCCACATACTGAGACTGGAATTTCAAGCTGACCACTCGATGTCAGGGCGTGGCTTCAACATCACATACAACA
Seq A exon
CATTTGGACATAATGAATGCCCAGATCCTGGAATACCCATCAATGCTCGTCGCTTTGGAGACAACTTTCAATTAGGAAGCTCCATTTCAGTTATTTGTGAAGAAGGGTTTATTAAAACCCAGGGAACAGAAACAATTACATGCATTCTGATGGATGGAAAAGTAATGTGGAGTGGACCAATTCCAAGATGTGGAG
Seq C2 exon
CTCCGTGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTAATTCTCTCACCAGGGTGGCCAGGATACTACAAAGACTCTTTGAATTGTGAGTGGGTGATTGAAGCTGAACCTGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'15-21,'15-20,16-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATCCACCTTTCCTTCAA
R:
CTTGGAGCTGAAAAGTGGCCA
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]