DreEX6042847 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47977979-47983298:-
Coord C1 exon
chr16:47982972-47983298
Coord A exon
chr16:47980012-47980206
Coord C2 exon
chr16:47977979-47978117
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTTATTTGTTCAGCGT
3' ss Score
6.74
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTCCCTGTATGTCTAACTTCACGGCCGCGATGGGAACCGTTCTGTCCCCGGACTATCCAGAGGGTTATGGGAACAACCTGAACTGCGTCTGGCTGATCATCGCTGAAGCGGGCAGCCGCATCCATCTGGCTTTCAATGACTTCGACCTGGAGCCTCCGTATGACTTCCTGACGGTGAGGGACGGGGATTTGGCGGACGCTGTGGTGCTGGGACGCTTCTCCGGTGCGGAAGTGCCATCTCACCTCACCAGCAATTCCAACATTCTCCAGCTGGAGTTTCAAGCTGATCACTCCATGTCTGGCCGAGGTTTCAACATCACATACAGCA
Seq A exon
CGTTTGGACACAATGAGTGCCCGGACCCCGGAGTGCCTATGAATGCCAAGCGTTTCGGTAATAACTTCCAGCTGGGAAGCTCCATATCAGTCGTGTGCGAGGAGGGTTTCATCAAGACGCAAGGCTCCGATACTATTGTGTGTGAACTGGAGGCGGGGAAGGTGATGTGGAGCGGTTTGATCCCCAAGTGTGAAG
Seq C2 exon
CACCCTGCGGAGGCCATTTCACCGCTCCGGTGGGAGTCATTCTGTCCCCAGGGTGGCCCGGCTACTACAAAGACTCCTTGAGCTGTGAGTGGGTCATCGAGGCCGAGACGGGACGCTCCATCAAGATAAGCTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'5-21,'5-15,16-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATATTCCTGTGCCAATAGTGAGCA
R:
ACGCCCGCACGCACATAT
Band lengths:
194-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]