MmuEX6053498 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47813419-47836513:-
Coord C1 exon
chr15:47836187-47836513
Coord A exon
chr15:47833013-47833207
Coord C2 exon
chr15:47813419-47813557
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTCTCCTTTTTAAGCAT
3' ss Score
9.44
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TTCCTTGCCTCTCTAACTTCACTGCACCAATGGGAACAGTCCTTTCCCCTGATTATCCAGAAGGTTATGGAAATAATTTAAATTGTATCTGGACAATAATCTCTGATCCAGGAAGCCGGATCCACCTTTCCTTCAATGACTTTGATCTGGAATCTCAATTTGACTTTCTTGCTGTTAAAGATGGTGACTCACCAGATTCCCCAATTCTGGGAACCTTTACTGGGGCAGAGGTGCCTTCCCATCTTACTAGTAACAGCCACATACTGCGACTGGAATTTCAAGCTGACCACTCTATGTCAGGGCGTGGCTTCAACATCACATACAATA
Seq A exon
CATTTGGACATAATGAATGCCCAGATCCTGGAATACCCATCAATGCTCGTCGCTTTGGAGACAACTTTCAATTGGGCAGTTCTATTTCAGTTATTTGTGAAGAAGGGTTTATTAAAACCCAGGGAACAGAAACAATTACATGCATTCTGATGGATGGAAAAGTAATGTGGAGTGGACCAATTCCAAGATGTGGAG
Seq C2 exon
CTCCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTAATTCTCTCACCAGGATGGCCAGGATACTACAAAGACTCTTTGAATTGTGAGTGGGTGATTGAAGCTGAACCTGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'27-18,'27-16,28-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATCCAGGAAGCCGGATC
R:
CTTGGAGCTGAAAAGTGGCCA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: