GgaEX6022103 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139193367-139210037:-
Coord C1 exon
chr2:139209711-139210037
Coord A exon
chr2:139194706-139194900
Coord C2 exon
chr2:139193367-139193505
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTCTTTGCACAGCAT
3' ss Score
8.39
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TTCCTTGCCTTTCCAATTTCACTGCACCAATGGGAACTGTACTTTCACCCGATTATCCAGAAGGATATGGGAATAATTTAAATTGTATCTGGACAATAATTTCAGACCCTGGAAGCCGAATCCATCTTTCTTTTAATGATTTTGACTTGGAATCTCAGTTTGACTTCCTTGCAGTTAAAGATGGTGACTCTCCAGATTCCCCCATAATAGGAACATTTACTGGTGCTGAAGTTCCTTCTCATCTTACCAGTAATGGTCATATTTTACGTCTGGAGTTTCAAGCTGACCATTCAATGTCAGGACGTGGATTTAACATCACTTATAACA
Seq A exon
CATTTGGGCATAATGAATGCCCTGATCCCGGAGTACCAATCAATGCTCGGCGTTTTGGTGACAACTTTCAGTTGGGGAGCTCAATTTCTGTTATTTGTGAGGAAGGATTTATCAAAACACAGGGAACTGAAACAATCACTTGCATGCTAGTGGATGGAAAAGTAATGTGGAGTGGACCTATTCCTAAGTGTGGAG
Seq C2 exon
CTCCGTGTGGTGGGCATTTTTCATCTCCCAGTGGAGTAATCCTCTCTCCAGGCTGGCCTGGGTATTATAAAGACTCCTTGAATTGTGAGTGGGTGATAGAAGCTGAACCAGGACACTCTATCAAAATTACATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCAGACCCTGGAAGCCG
R:
GAAAAATGCCCACCACACGGA
Band lengths:
252-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]