HsaEX6084611 @ hg38
Exon Skipping
Gene
ENSG00000185873 | TMPRSS11B
Description
transmembrane protease, serine 11B [Source:HGNC Symbol;Acc:HGNC:25398]
Coordinates
chr4:68226653-68229516:-
Coord C1 exon
chr4:68229257-68229516
Coord A exon
chr4:68228742-68228884
Coord C2 exon
chr4:68226653-68228072
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCAGCACTTATTGCTTTTAGGTT
3' ss Score
5.12
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAAAAATAATTCAAAAGATTGGACTGTCAACTTTGGAATTGTAGTAAATAAACCATATATGACACGGAAAGTCCAAAACATTATTTTTCATGAAAATTATAGCAGTCCTGGGCTTCATGATGATATTGCCCTTGTGCAGCTTGCTGAAGAAGTTTCTTTTACAGAGTACATTCGTAAGATTTGTCTTCCTGAAGCCAAAATGAAGCTCTCAGAAAATGACAATGTTGTAGTTACAGGTTGGGGAACACTTTATATGAATG
Seq A exon
GTTCATTTCCAGTGATACTTCAAGAAGACTTTTTGAAGATTATTGACAACAAAATTTGCAATGCCTCATATGCATACTCTGGCTTTGTGACTGATACAATGTTATGTGCTGGATTTATGTCAGGAGAAGCTGATGCATGTCAG
Seq C2 exon
AATGATTCTGGTGGACCACTAGCTTACCCTGATTCCAGAAATATCTGGCATCTTGTTGGAATAGTAAGCTGGGGTGATGGATGTGGTAAAAAGAATAAGCCAGGTGTCTATACTCGAGTGACTTCTTATCGCAATTGGATTACATCCAAGACTGGACTCTGAAAAAAAAGGAATTATACAAAGGAACATAAAGACCACTGTAGGCTATCCTTATCTGTGGCTTTGGGATCTTTTTATTTTGATTGTTGGTAAACTAATCATTTTATTATATATAAAAATATAAATGTCTTTATTAATATTTTATTATATCTAAAACACTGTCCATGCATTTATTAATCTTTTAAATTAATGTAAGAGATAGGAAGAGGCCAGGTGTAGTGGCTCATGCCTGTAATCCTAGCACTTTGAGAGGCCGAGATAGGCGGATTGCTTGAGCCCAGGAGTTTGAGGGCAGCCTGGGAAACATGGCTAAATCCGTGTTCAAAAAATACAAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185873-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAGTCCTGGGCTTCATGA
R:
TACCACATCCATCACCCCAGC
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains