HsaEX6091393 @ hg19
Exon Skipping
Gene
ENSG00000196415 | PRTN3
Description
proteinase 3 [Source:HGNC Symbol;Acc:9495]
Coordinates
chr19:840985-844034:+
Coord C1 exon
chr19:840985-841069
Coord A exon
chr19:843461-843626
Coord C2 exon
chr19:843893-844034
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCTGGACTCCCCCCCTGCAGGTG
3' ss Score
10.13
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
CGTGGGTGCACCCTGGACCCCACCATGGCTCACCGGCCCCCCAGCCCTGCCCTGGCGTCCGTGCTGCTGGCCTTGCTGCTGAGCG
Seq A exon
GTGCTGCCCGAGCTGCGGAGATCGTGGGCGGGCACGAGGCGCAGCCACACTCCCGGCCCTACATGGCCTCCCTGCAGATGCGGGGGAACCCGGGCAGCCACTTCTGCGGAGGCACCTTGATCCACCCCAGCTTCGTGCTGACGGCCGCGCACTGCCTGCGGGACAT
Seq C2 exon
ACCCCAGCGCCTGGTGAACGTGGTGCTCGGAGCCCACAACGTGCGGACGCAGGAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTACGACGCGGAGAACAAACTGAACGACGTTCTCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196415-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(22.2=85.7)
C2:
PF0008921=Trypsin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGGACCCCACCAT
R:
TGGATGAGGAGAACGTCGTTC
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)