MmuEX0037463 @ mm9
Exon Skipping
Gene
ENSMUSG00000057729 | Prtn3
Description
proteinase 3 [Source:MGI Symbol;Acc:MGI:893580]
Coordinates
chr10:79337221-79343922:+
Coord C1 exon
chr10:79337221-79337466
Coord A exon
chr10:79343173-79343338
Coord C2 exon
chr10:79343781-79343922
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGACACCTACTTCCCCTAGGCG
3' ss Score
8.4
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGGTCTCAGGGTCTCTGGCCCTGCGCGGGGACCGCAATCTGGGTCTCGTCCCTGCCCCTTGCGCGTGCCTTCTGTGCGCCTTGCGCGAGCACGGTTGATCTCCGGGACCTAGGAGCGCGCGGCGCAGTGTGGGGAAGGCGAGATCCCGCGCCCCGCGCCTCCAGTTGCCTCCCTGCGTCTCACGGTCGCCGATTCCTCGGCCCCCACGCCTTCCGTGCCCGCGGCTCGCTGGAGTCCGTTTCCATG
Seq A exon
GCGCAGTCCAGGCCTCCAAGATTGTAGGTGGGCACGAGGCTCGGCCCCACTCTCGGCCTTATGTGGCATCCCTGCAGCTGAGCAGGTTCCCTGGGAGCCACTTCTGTGGTGGCACCCTGATCCACCCGAGATTCGTGCTGACAGCCGCCCACTGCCTGCAGGACAT
Seq C2 exon
CTCCTGGCAGCTTGTGACAGTGGTGCTGGGTGCCCACGACCTGCTGAGCTCGGAGCCTGAGCAGCAGAAGTTCACCATCAGTCAGGTCTTCCAGAACAATTACAACCCCGAGGAGAACCTCAATGACGTGCTTCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057729-'0-5,'0-2,3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(22.2=85.7)
C2:
PF0008921=Trypsin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATCTCCGGGACCTAGG
R:
TGGAAGACCTGACTGATGGTGA
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types