HsaEX6092689 @ hg38
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9140380-9156748:+
Coord C1 exon
chr19:9140380-9140592
Coord A exon
chr19:9155925-9156041
Coord C2 exon
chr19:9156612-9156748
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCATTTGCTACAGATG
3' ss Score
10.38
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGAATTGGAAGGCGGCAGTGAAGCGGAAGCCATTACTCTCTGGAGTCGATTGCCCCGAGACACATGGGCCAAGGAGGGGTCAGCGGCGAATTCTTTCGGCCTGTTGGGGACCCCTCGTGTCCCCACGCCAGACTGGACCTCCCGTATGAACTTCTCTTCGCATCGGCGGCGGCTTCCGTCACCTCCGCTCCCCCGATCCTATTCCCAGTCGT
Seq A exon
ATGCCAGCTTGGAGAGTCACGTGAGAGCAAGAGAGTAGCTTTCTGGTTGTCCTGGTGCCCTGCTCAGGCAAACTGACTGCCATTCTCTGAGGATGGCAGCTCTGTCCCCCACATTTG
Seq C2 exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-'0-5,'0-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTTCGGCCTGTTGGGG
R:
GTGTGAGGCTCCAGACCACT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains