MmuEX7006006 @ mm10
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19632334-19642103:+
Coord C1 exon
chr9:19632334-19632388
Coord A exon
chr9:19641066-19641254
Coord C2 exon
chr9:19641964-19642103
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTGCGTTTCTCTTCCTTTAGGTT
3' ss Score
11.89
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCCTGGCAAAAGCATTCTGCTTTTTGCCTTCATGAATGACTTCTTGGACCTCAT
Seq A exon
GTTGATAACCTGTCTGATTATGAGTCAAGAGGAAATGTCAAGAAACAAAATTCAGTGTTCTCCTCACTAAGTAAAAGACATAGCCTTTGAAGAATACCTTGTGGCAATTGTCCACGTAGGAATGCAGTGCTTCTTCAGGTACTCCCAGTGCCCCACAGATGGCTACCATCAGTCTATCTCCCAAGTTTG
Seq C2 exon
CTATGTCCTCTCTGGACTCTGCAGATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-'6-15,'6-10,17-15=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGGCAAAAGCATTCTGC
R:
TGAGAACAAACACGAGCTGGT
Band lengths:
194-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types