BtaEX0041233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14734733-14743436:+
Coord C1 exon
chr7:14734733-14734920
Coord A exon
chr7:14742555-14742674
Coord C2 exon
chr7:14743294-14743436
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCATTTCCTACAGATG
3' ss Score
12.54
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GGAAGTGAAGCGGAAGCCATTACTCTTGGGAGGAGAGTGCTGCTATACACATGGGAAGAGGAGTGGTCCACCGTAGCTTCTTACAAGCTCTTGGTCCTCGCGGCCGATCGGACTTTCCGTATGAACTTGTCATCCCTTCGGCCGCAGCTTCCGTGACCTTTGCTTCCCATGATTCTACTGTCGGTGAT
Seq A exon
ATGTCCGCTCCAGGAGACCCATGAGAGAGAAAGTAGCTTCCTGGTCCAAGGCCCTGTTCTTCAGGCAGATTTACTGTCATTCTCGCAAGATGGCAGCTCTCGGCCTGGCTCCCACATGTG
Seq C2 exon
CTATGCCCAGTCAGGAGCCTGCCTATATCCATGAGTCAGAAGTTCCTCTTTCTTCAAAAGACCATTCCTGTCCCCAGGATGTGGACCTGTTTGCATGCAATGGCCTGGAGCCTCATACATCAACCAGTGTTGAACCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGAAGAGGAGTGGTCCA
R:
GCCATTGCATGCAAACAGGTC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development