HsaEX6092689 @ hg19
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:13507]
Coordinates
chr19:9251073-9267424:+
Coord C1 exon
chr19:9251073-9251268
Coord A exon
chr19:9266601-9266717
Coord C2 exon
chr19:9267288-9267424
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCATTTGCTACAGATG
3' ss Score
10.38
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTGAAGCGGAAGCCATTACTCTCTGGAGTCGATTGCCCCGAGACACATGGGCCAAGGAGGGGTCAGCGGCGAATTCTTTCGGCCTGTTGGGGACCCCTCGTGTCCCCACGCCAGACTGGACCTCCCGTATGAACTTCTCTTCGCATCGGCGGCGGCTTCCGTCACCTCCGCTCCCCCGATCCTATTCCCAGTCGT
Seq A exon
ATGCCAGCTTGGAGAGTCACGTGAGAGCAAGAGAGTAGCTTTCTGGTTGTCCTGGTGCCCTGCTCAGGCAAACTGACTGCCATTCTCTGAGGATGGCAGCTCTGTCCCCCACATTTG
Seq C2 exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-'0-3,'0-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.385 C2=0.228
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTTCGGCCTGTTGGGG
R:
GTGTGAGGCTCCAGACCACT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)