HsaEX6093634 @ hg19
Exon Skipping
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15783886-15789215:+
Coord C1 exon
chr19:15783886-15783945
Coord A exon
chr19:15784339-15784537
Coord C2 exon
chr19:15789071-15789215
Length
199 bp
Sequences
Splice sites
3' ss Seq
GCATCCCCTCTGCCCTGCAGGAT
3' ss Score
8.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAAGACCTCCCAGCAGAAGAGGAGAAGAGGTTGTGTGGGACAAGCTGCTCCCGACAGAAG
Seq A exon
GATGTCGCTGCTGAGCCTGCCCTGGCTGGGCCTCAGACCGGTGGCAACGTCCCCATGGCTACTCCTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGCTTGGACCTATGCCTTCTATAACAACTGCCGCCGGCTCCAGTGTTTCCCACAGCCCCCAAAACGGAACTGGTTTTGGGGTCACCTGGGCCTG
Seq C2 exon
ATCACTCCTACAGAGGAGGGCTTGAAGAACTCGACCCAGATGTCGGCCACCTATTCCCAGGGCTTTACGATATGGCTGGGTCCCATCATCCCCTTCATCGTTTTATGCCACCCTGACACCATCCGGTCTATCACCAATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(11.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCTCCCAGCAGAAGAGG
R:
CTGAGGCATTGGTGATAGACC
Band lengths:
204-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)