HsaEX6093634 @ hg38
Exon Skipping
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450 family 4 subfamily F member 12 [Source:HGNC Symbol;Acc:HGNC:18857]
Coordinates
chr19:15672757-15678405:+
Coord C1 exon
chr19:15672757-15673135
Coord A exon
chr19:15673529-15673727
Coord C2 exon
chr19:15678261-15678405
Length
199 bp
Sequences
Splice sites
3' ss Seq
GCATCCCCTCTGCCCTGCAGGAT
3' ss Score
8.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGCCAACTGTCATGATAAGTATATGCTTTTATCTGAACACCCTTGTCTTGGAAGGGCAGGGTGGAGGTAAACTTGGGGTTCAGAGTCCCCTCTAACCACCCTCCAACTTCCCCTGCAAACTCCCAAGAAGGTACTGAGACCTGAGAATTCAGTGCTCGTGCTGGGGCACCCTGAGCTGCACCCAGTGGGCCCAACCCCAGGTTTTGGCTGGCTGCCCAGGCACGGAAGACACACCCAGGCTGTGGGGATTGGCTGCCTCAGCCCAGCCCAGCCCAGCCCCGCCTCCTACGGCCTTCCCTAGATCAGGGGCCAGGGCCAAAGACCTCCCAGCAGAAGAGGAGAAGAGGTTGTGTGGGACAAGCTGCTCCCGACAGAAG
Seq A exon
GATGTCGCTGCTGAGCCTGCCCTGGCTGGGCCTCAGACCGGTGGCAACGTCCCCATGGCTACTCCTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGCTTGGACCTATGCCTTCTATAACAACTGCCGCCGGCTCCAGTGTTTCCCACAGCCCCCAAAACGGAACTGGTTTTGGGGTCACCTGGGCCTG
Seq C2 exon
ATCACTCCTACAGAGGAGGGCTTGAAGAACTCGACCCAGATGTCGGCCACCTATTCCCAGGGCTTTACGGTATGGCTGGGTCCCATCATCCCCTTCATCGTTTTATGCCACCCTGACACCATCCGGTCTATCACCAATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-'0-3,'0-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(11.1=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACACCCAGGCTGTG
R:
ACGATGAAGGGGATGATGGGA
Band lengths:
254-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains