RnoEX6030776 @ rn6
Exon Skipping
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14891001-14894486:+
Coord C1 exon
chr7:14891001-14891200
Coord A exon
chr7:14891459-14891657
Coord C2 exon
chr7:14894342-14894486
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCATCTGCCCCACAGGAT
3' ss Score
10.71
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGCAGAAGCCAGGAACAAAGAAACTCTGGAGGAGGGAGAACTGTGGGAAACTCACTGCTCCTGAGAGAAGGTGGCTGCTTAAGACCACCCATACTAAGTTAGACAGAGCACTGAACCTGGTTGCTTATTTCTCCATAACCAACTCTCTGAAGCCAAACAGCCAGAGTGATCCTGTTGGCTTCAGACAGGGGGGTTTCCAG
Seq A exon
GATGCCACAGTTGGACCTGTCCTGGCTGGGACTGAGGCTGGAGACATCCTTACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGTCCGTGTCTTGACTCAGACCTATATCTTCTACAGAACATATCAACATCTTTGTGATTTCCCTCAACCACCCAAATGGAATTGGTTCTTGGGTCACCTGGGCATG
Seq C2 exon
ATCACTCCCACTGAGCAAGGTCTGAAGCAGGTAACTAAGCTCGTGGCCACCTACCCCCAGGGCTTCATGACATGGCTGGGTCCTATCCTCCCTATCATCACTCTGTGCCACCCTGACGTCATTCGATCTGTTCTCAGTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAACTCACTGCTCCTGA
R:
AGGATAGGACCCAGCCATGTC
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]