HsaEX6100189 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139743313-139744210:+
Coord C1 exon
chr5:139743313-139743487
Coord A exon
chr5:139743639-139743772
Coord C2 exon
chr5:139743948-139744210
Length
134 bp
Sequences
Splice sites
3' ss Seq
GAGCCCCTGTTGGCTTCCAGGGA
3' ss Score
6.59
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGTTTGGGGGCCTTATCCAGGACGTGCGCAGGAAGGTCCCGTGGTACCCCAGCGATTTCTTGGACGCCCTGCATCTCCAGTGCTTCTCGGCCGTACTCTACATTTACCTGGCCACTGTCACTAATGCCATCACTTTTGGGGGTCTGCTGGGAGATGCCACTGATGGTGCCCAG
Seq A exon
GGAGTGCTGGAAAGTTTCCTGGGCACAGCAGTGGCTGGAGCTGCCTTCTGCCTGATGGCAGGCCAGCCCCTCACCATTCTGAGCAGCACGGGGCCAGTGCTGGTCTTTGAGCGCCTGCTCTTCTCTTTCAGCAG
Seq C2 exon
AGATTACAGCCTGGACTACCTGCCCTTCCGCCTATGGGTGGGCATCTGGGTGGCTACCTTTTGCCTGGTGCTGGTGGCCACAGAGGCCAGTGTGCTGGTGCGCTACTTCACCCGCTTCACTGAGGAAGGTTTCTGTGCCCTCATCAGCCTCATCTTCATCTACGATGCTGTGGGCAAAATGCTGAACTTGACCCATACCTATCCTATCCAGAAGCCTGGGTCCTCTGCCTACGGGTGCCTCTGCCAATACCCAGGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'8-12,'8-11,9-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(21.3=100)
C2:
PF0095516=HCO3_cotransp=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATCTCCAGTGCTTCTCG
R:
GGGCACAGAAACCTTCCTCAG
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)