MmuEX0043440 @ mm10
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36531434-36532232:+
Coord C1 exon
chr18:36531434-36531526
Coord A exon
chr18:36531678-36531811
Coord C2 exon
chr18:36531970-36532232
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGAGATCTGTCCACTTCCAGGGA
3' ss Score
6.25
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
TGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGCCATCACTTTTGGGGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAG
Seq A exon
GGAGTGCTGGAGAGTTTCCTGGGCACAGCGGTGGCTGGAGCTGCCTTCTGCCTGATGGCAGGCCAGCCCCTCACTATCCTTAGCAGCACAGGGCCAGTGCTGGTATTTGAGCGCCTACTCTTCTCTTTTAGCAG
Seq C2 exon
AGATTACAGCCTGGATTATCTGCCCTTCCGCCTATGGGTCGGCATCTGGGTGACCGCATTTTGCCTGGCACTGGTGGCTACGGAGGCCAGCTTGCTGGTGCGCTACTTCACCAGATTCACAGAGGAAGGATTCTGTGCCCTCATCAGCCTCATCTTCATCTATGATGCCATGGGGAAGATGCTGAATTTGATCCGTGCCTATCCAATCCAAAGGCCAGGGTCTTCTGCCTATGGTTGCTTCTGTCAATACCCAGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485_MULTIEX1-9/16=8-10
Average complexity
S
Mappability confidence:
99%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(4.3=56.2)
A:
PF0095516=HCO3_cotransp=FE(9.6=100)
C2:
PF0095516=HCO3_cotransp=FE(20.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTGGGGGTCTTCTGGGA
R:
AGGCACGGATCAAATTCAGCA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types