MmuEX0043439 @ mm10
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36531100-36532232:+
Coord C1 exon
chr18:36531100-36531216
Coord A exon
chr18:36531352-36531526
Coord C2 exon
chr18:36531970-36532232
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGATGACCCACGGGTGGGAGGCT
3' ss Score
-7.71
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTCCCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAAAGGACAGGCAG
Seq A exon
GCTCTTTGGGGGTCTTATTCAGGACGTGCGCCGGAAGGCATGTTGGTACACCAGTGATTTCCTGGATGCCCTACACCCCCAGTGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGCCATCACTTTTGGGGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAG
Seq C2 exon
AGATTACAGCCTGGATTATCTGCCCTTCCGCCTATGGGTCGGCATCTGGGTGACCGCATTTTGCCTGGCACTGGTGGCTACGGAGGCCAGCTTGCTGGTGCGCTACTTCACCAGATTCACAGAGGAAGGATTCTGTGCCCTCATCAGCCTCATCTTCATCTATGATGCCATGGGGAAGATGCTGAATTTGATCCGTGCCTATCCAATCCAAAGGCCAGGGTCTTCTGCCTATGGTTGCTTCTGTCAATACCCAGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485_MULTIEX1-8/16=7-10
Average complexity
C2*
Mappability confidence:
99%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.3=15.0)
A:
PF0095516=HCO3_cotransp=PU(4.3=56.2)
C2:
PF0095516=HCO3_cotransp=FE(20.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGCAGGAGGTCACCAG
R:
GCTGATGAGGGCACAGAATCC
Band lengths:
256-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types