GgaEX1053626 @ galGal4
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:978119-979597:+
Coord C1 exon
chr13:978119-978235
Coord A exon
chr13:978450-978624
Coord C2 exon
chr13:979464-979597
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTGGGCTGCTGCAGGCT
3' ss Score
6.69
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATCTCCATGCGCCTGCGGGAGTGGAAATCTCACTGCAATGGGAACACAACTGCTGTCAAGGACTGGCCTAGCCTGGCCCACCTGCATACCAGTGAGGAGCTAGAGAGGACAGGAAG
Seq A exon
GCTCTTTGGGGGGCTGATCCGAGACATCCGAAGGAAGGCACACTGGTATCGCAGTGATTTCTCTGATGCCATGCACATTCAGTGCCTCTCAGCAGTTCTCTACATCTACCTGGCAACGGTTACCAATGCCATCACCTTTGGGGGCATGCTGGGGGATGCAACAGCCAACATGCAG
Seq C2 exon
GGTGTACTGGAGAGCTTCCTGGGCACTGCCTTCACTGGCTTCATCTTCTGCCTCTTCTCTGGCCAGCCCCTGACCATCTTGAGCAGCACTGGCCCAGTTCTGGTCTTTGAGCGTCTCCTCTTCTCCTTCAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.3=15.0)
A:
PF0095516=HCO3_cotransp=FE(12.5=100)
C2:
PF0095516=HCO3_cotransp=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGAGTGGAAATCTCAC
R:
TGAAGGAGAAGAGGAGACGCT
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]