DreEX6012908 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45186111-45192099:-
Coord C1 exon
chr5:45191986-45192099
Coord A exon
chr5:45190759-45190933
Coord C2 exon
chr5:45186111-45186244
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTTGTATTTTATTCATCAGGTT
3' ss Score
8.52
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
AAAGAACATGTATGCTGGAGGGGACAGCACACAGATGAATGGAGACACTCCTCACAGCGGTGGGCACGGCGGCGGGGGACACGCAGTGGGTGACGAGCTGAAGAAGACGGGGAA
Seq A exon
GTTTTGTGGAGGCCTTATTCTTGACGTCAAAAGAAAAGTCCCTTTTTTCTTCAGTGATTTCTACGATTCACTACACATCCAGTCTTTGTCTGCCATTCTTTTCATCTATCTGGGAACAGTAACCAATGCCATCACGTTTGGAGGACTGCTGGGCGACGCCACAGAAAACATGCAG
Seq C2 exon
GGTGTGCTGGAGAGTTTTCTGGGTACAGCGGTGACTGGTGCGGTCTTCTGTCTCCTGGCCGGACAACCATTGATCATCCTCAGCAGTACAGGGCCAGTACTGGTGTTTGAAAGGCTGCTCTTCAACTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=15.4)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTATGCTGGAGGGGACA
R:
TGCTGAAGTTGAAGAGCAGCC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]