MmuEX6018653 @ mm10
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89133157-89149433:+
Coord C1 exon
chr5:89133157-89133270
Coord A exon
chr5:89135646-89135820
Coord C2 exon
chr5:89149300-89149433
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTCTCCCTGCTCAGGTT
3' ss Score
11.24
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGAATATGTACTCAGGTGGAGAGAATGTTCAGATGAATGGGGACACACCTCATGATGGAGGCCACGGAGGAGGAGGACATGGTGACTGTGAAGAACTACAGAGAACTGGCCG
Seq A exon
GTTCTGCGGTGGATTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGATGCTTTAAACATTCAGGCTCTCTCTGCGATTCTCTTCATTTATCTGGCAACCGTAACCAACGCCATCACTTTTGGAGGCCTGCTCGGGGATGCCACCGACAACATGCAG
Seq C2 exon
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCCGGAGCCATCTTCTGCCTTTTTGCGGGTCAACCGCTTACCATCTTGAGCAGCACGGGACCAGTGTTGGTGTTTGAGAGGCTTCTTTTTAACTTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'40-28,'40-27,42-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.1=15.4)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGGAGAGAATGTTCAGA
R:
TGCTGAAGTTAAAAAGAAGCCTCT
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types