GgaEX0017475 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49743894-49750841:+
Coord C1 exon
chr4:49743894-49744007
Coord A exon
chr4:49745509-49745683
Coord C2 exon
chr4:49750708-49750841
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGCTTGTCTTTTCAGATT
3' ss Score
11.52
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GAAAAACATGTACTCTGGTGGAGAAAATCTGCAGATGAATGGAGACACGCCTCATGATGGAGGACATGGAGGTGGGGGCCACGGGGACTGTGAAGAGCTGCAGAGAACCGGCAG
Seq A exon
ATTCTGTGGTGGCTTAATCAAAGACATAAAGAGGAAAGCACCATTCTTCGCCAGTGACTTCTATGATGCTTTAAATATTCAAGCCCTTTCAGCCATTCTTTTCATCTACCTGGCCACAGTGACCAATGCTATCACTTTTGGAGGACTGCTTGGTGATGCTACAGAAAACATGCAG
Seq C2 exon
GGTGTGTTGGAGAGTTTTCTGGGCACAGCAGTCACCGGAGCGATATTTTGCCTTTTTGCTGGCCAGCCACTCACTATTTTAAGCAGCACGGGACCTGTCCTTGTCTTTGAACGGCTTCTCTTTAATTTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'27-21,'27-20,28-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=15.4)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTACTCTGGTGGAGAAAA
R:
TGCTGAAATTAAAGAGAAGCCGT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]