BtaEX0033340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88443768-88462283:+
Coord C1 exon
chr6:88443768-88443881
Coord A exon
chr6:88446105-88446279
Coord C2 exon
chr6:88462150-88462283
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTTCCCTACCCAGGTT
3' ss Score
9.73
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGAATATGTACTCAGGTGGAGAGAATGTTCAGATGAATGGGGACACGCCCCACGATGGAGGCCATGGAGGAGGAGGACATGCAGATTGTGAGGAATTGCAGCGCACTGGAAG
Seq A exon
GTTCTGTGGTGGACTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGATGCTTTAAATATTCAGGCTCTTTCAGCAATTCTCTTCATTTATCTGGCAACTGTAACTAATGCTATCACTTTCGGAGGACTGCTTGGGGATGCCACTGACAACATGCAG
Seq C2 exon
GGTGTGCTGGAGAGTTTCCTGGGCACCGCTGTCTCTGGAGCCATCTTTTGCCTCTTTGCTGGTCAACCACTCACTATTTTGAGCAGCACAGGACCTGTTCTCGTTTTTGAGAGGCTTCTATTTAATTTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.1=15.4)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGGAGAGAATGTTCAGA
R:
TGCTGAAATTAAATAGAAGCCTCTCA
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development