RnoEX0082830 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20559637-20577142:-
Coord C1 exon
chr14:20577029-20577142
Coord A exon
chr14:20574303-20574477
Coord C2 exon
chr14:20559637-20559770
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTTCCTTGCCCAGGTT
3' ss Score
9.08
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAGAATATGTACTCAGGTGGAGAGAACGTTCAGATGAATGGGGACACACCTCATGATGGAGGCCACGGAGGAGGAGGCCACGGTGACTGTGAAGAACTACAGAGAACTGGCCG
Seq A exon
GTTCTGTGGTGGATTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGACGCTTTAAATATTCAGGCTCTCTCGGCAATTCTCTTCATCTATCTGGCGACGGTAACCAACGCCATCACTTTCGGAGGCCTGCTCGGGGATGCCACTGACAACATGCAG
Seq C2 exon
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCTGGCGCCATCTTTTGCCTTTTTGCGGGTCAACCGCTCACCATCTTGAGTAGCACGGGACCTGTTCTGGTGTTTGAGAGGCTTCTTTTCAACTTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'30-28,'30-25,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.1=15.4)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGGAGAGAACGTTCAGA
R:
TGCTGAAGTTGAAAAGAAGCCTCT
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]