BtaEX0033364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53246199-53246929:+
Coord C1 exon
chr7:53246199-53246315
Coord A exon
chr7:53246481-53246655
Coord C2 exon
chr7:53246796-53246929
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGACAACCCATGGGCGGGAGGCT
3' ss Score
-8.94
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCCCTTCGCAATTGCGGGTGGCCAAGGGGCCCTCTGTCCGGAGAAGGACCCCAGCTGAGGACAGGCACGGCCGCAGACAGCACGCGGCTAACCCGGAGTTGCGGCGGACAGGCAG
Seq A exon
GCTGTTCGGGGGCCTTGTCCAGGACGTGCGGCGGAAGGCCTCGTGGTACCCCAGCGACTTCTTGGACGCCCTGCACCCCCAGTGCTTCTCGGCCGTGCTCTACATTTACCTGGCCACCATCACTAACGCCATCACTTTTGGGGGTCTGCTGGGAGAAGCCACCGACGGTGCGCAG
Seq C2 exon
GGGGTGCTGGAAAGCTTCCTGGGCACGGCAGTGACTGGAGCTGCCTTCTGCCTGATGGCTGGCCAGCCCCTCACCATCCTTAGCAGCACCGGGCCAGTGCTGGTCTTTGAACGTCTGCTCTTCTCCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=15.0)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCGGGTGGCCAAGG
R:
GCTGAAGGAGAAGAGCAGACG
Band lengths:
238-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development