RnoEX0082885 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29355606-29356324:+
Coord C1 exon
chr18:29355606-29355722
Coord A exon
chr18:29355957-29356049
Coord C2 exon
chr18:29356191-29356324
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGATGCCCTACATCCCCAGTGT
3' ss Score
5.5
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTTCCCTCGAAACTGCAGGAGGTCACCAGCCTCTCCCGCCAGAGTGCTGCCTTGGCAGAAAACAAGCACCACCATGGGCCGCACACACCCATCCCAGAATTGCAAAGGACGGGCAG
Seq A exon
TGTTTCTCAGCGGTGCTCTACATTTACCTGGCCACAGTCACAAATGCCATCACTTTTGGGGGTCTTCTGGGAGATGCCACCGAAGGTGCCCAG
Seq C2 exon
GGAGTGCTGGAGAGTTTCCTGGGCACAGCGGTGGCTGGAGCCACCTTCTGCCTGATGGCAGGTCAGCCCCTCACTATCCTTAGCAGCACAGGGCCAGTGCTGGTATTTGAGCGCCTACTTTTTTCTTTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525-'8-12,'8-11,9-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=15.0)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACAAGCACCACCATGGG
R:
TAGGCGCTCAAATACCAGCAC
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]