DreEX0073058 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45181659-45190933:-
Coord C1 exon
chr5:45190759-45190933
Coord A exon
chr5:45186111-45186244
Coord C2 exon
chr5:45181659-45181930
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTATGTTTGTTGAAGGGT
3' ss Score
5.93
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
GTTTTGTGGAGGCCTTATTCTTGACGTCAAAAGAAAAGTCCCTTTTTTCTTCAGTGATTTCTACGATTCACTACACATCCAGTCTTTGTCTGCCATTCTTTTCATCTATCTGGGAACAGTAACCAATGCCATCACGTTTGGAGGACTGCTGGGCGACGCCACAGAAAACATGCAG
Seq A exon
GGTGTGCTGGAGAGTTTTCTGGGTACAGCGGTGACTGGTGCGGTCTTCTGTCTCCTGGCCGGACAACCATTGATCATCCTCAGCAGTACAGGGCCAGTACTGGTGTTTGAAAGGCTGCTCTTCAACTTCAGCAG
Seq C2 exon
GGAAAATGACTTTGACTATCTAGAGTTTCGACTTTGGATTGGTCTGTGGTCGGCCTTCTTTTGCCTAGTTCTGGTGGCCACTGATGCCAGCTTCCTGGTGCAGTATTTCACCCGATTTACAGAAGAAGGCTTTTCCTCGCTGATCAGCTTCATCTTCATCTATGACGCTTTCAAAAAGATGCTGAAGTTGGCCCATTACTACCCCATCAACTCAGACTTCAAAATCGACTATGTGACGCAGTATGACTGCATGTGCATGGCGCCCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
PF0095516=HCO3_cotransp=FE(8.4=100)
C2:
PF0095516=HCO3_cotransp=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCATCACGTTTGGAGGAC
R:
TGGGGTAGTAATGGGCCAACT
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]