RnoEX0082832 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20553224-20574477:-
Coord C1 exon
chr14:20574303-20574477
Coord A exon
chr14:20559637-20559770
Coord C2 exon
chr14:20553224-20553495
Length
134 bp
Sequences
Splice sites
3' ss Seq
CGGAATGTTCTCTCTTTCAGGGT
3' ss Score
11.48
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTCTGTGGTGGATTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGACGCTTTAAATATTCAGGCTCTCTCGGCAATTCTCTTCATCTATCTGGCGACGGTAACCAACGCCATCACTTTCGGAGGCCTGCTCGGGGATGCCACTGACAACATGCAG
Seq A exon
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCTGGCGCCATCTTTTGCCTTTTTGCGGGTCAACCGCTCACCATCTTGAGTAGCACGGGACCTGTTCTGGTGTTTGAGAGGCTTCTTTTCAACTTCAGCAA
Seq C2 exon
GGACCATAGTTTTGACTACTTGGAGTTTCGTCTTTGGATTGGCCTGTGGTCAGCCTTCATGTGTCTCATCCTGGTGGCCACTGATGCCAGCTTCCTGGTTCAGTACTTCACCCGTTTCACGGAAGAAGGATTCTCCTCTCTGATCAGCTTCATCTTCATCTATGATGCTTTCAAGAAGATGATCAAGCTGGCAGATTACTATCCCATCAACTCTGACTTCAGAGTGGGCTACAACACTCACTTCTCCTGTGCTTGCCTGCCACCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'32-29,'32-28,35-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
PF0095516=HCO3_cotransp=FE(21.9=100)
C2:
PF0095516=HCO3_cotransp=FE(17.4=100)
Main Skipping Isoform:
ENSRNOT00000004391fB13730
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCCACTGACAACATGCA
R:
TGTAGCCCACTCTGAAGTCAG
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]