GgaEX0017476 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51832100-51841664:+
Coord C1 exon
chr4:51832100-51832274
Coord A exon
chr4:51837299-51837432
Coord C2 exon
chr4:51841393-51841664
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGTCTCTACCGCAGGGT
3' ss Score
11.18
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATTCTGTGGTGGCTTAATCAAAGACATAAAGAGGAAAGCACCATTCTTCGCCAGTGACTTCTATGATGCTTTAAATATTCAAGCCCTTTCAGCCATTCTTTTCATCTACCTGGCCACAGTGACCAATGCTATCACTTTTGGAGGACTGCTTGGTGATGCTACAGAAAACATGCAG
Seq A exon
GGTGTGTTGGAGAGTTTTCTGGGCACAGCAGTCACCGGAGCGATATTTTGCCTTTTTGCTGGCCAGCCACTCACTATTTTAAGCAGCACGGGACCTGTCCTTGTCTTTGAACGGCTTCTCTTTAATTTCAGCAA
Seq C2 exon
AGACAATGATTTTGACTACCTGGAGTTTCGTCTCTGGATTGGTCTTTGGTCAGCCTTCCAGTGTCTCATTCTTGTTGCTACTGATGCCAGCTTCCTGGTCAAGTACTTCACACGCTTCACCGAAGAAGGTTTCTCCTCACTTATTAGCTTCATCTTCATTTATGATGCTTTCAAGAAGATGATCAAGCTGGCAGATTATTACCCTATAAACTCCGAGTTCAAGGTGGATTATATCACACGTTATTCATGTGCCTGTGAACCACTGGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
PF0095516=HCO3_cotransp=FE(8.4=100)
C2:
PF0095516=HCO3_cotransp=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCACCATTCTTCGCC
R:
CCAGGAAGCTGGCATCAGTAG
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]