MmuEX6018652 @ mm10
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89135646-89156602:+
Coord C1 exon
chr5:89135646-89135820
Coord A exon
chr5:89149300-89149433
Coord C2 exon
chr5:89156331-89156602
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGCATGTTCTTTCTTTTAGGGT
3' ss Score
11.57
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTCTGCGGTGGATTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGATGCTTTAAACATTCAGGCTCTCTCTGCGATTCTCTTCATTTATCTGGCAACCGTAACCAACGCCATCACTTTTGGAGGCCTGCTCGGGGATGCCACCGACAACATGCAG
Seq A exon
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCCGGAGCCATCTTCTGCCTTTTTGCGGGTCAACCGCTTACCATCTTGAGCAGCACGGGACCAGTGTTGGTGTTTGAGAGGCTTCTTTTTAACTTCAGCAA
Seq C2 exon
GGACCATAATTTTGACTACTTGGAGTTTCGTCTTTGGATTGGCCTGTGGTCAGCCTTCATGTGTCTTGTCCTGGTGGCCACTGATGCGAGCTTCCTGGTTCAGTACTTCACCCGTTTCACAGAAGAAGGTTTCTCCTCTCTCATCAGCTTCATCTTCATCTATGATGCTTTCAAGAAGATGATCAAGCTAGCAGATTACTATCCCATCAACTCTGACTTCAAAGTGGGTTACAATACTCACTTCTCTTGTGCTTGCCTGCCACCCGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'42-29,'42-28,43-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
PF0095516=HCO3_cotransp=FE(8.4=100)
C2:
PF0095516=HCO3_cotransp=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAGGCTCTCTCTGCGA
R:
AGCTGATGAGAGAGGAGAAACC
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types