HsaEX7010890 @ hg38
Exon Skipping
Gene
ENSG00000237037 | NDUFA6-AS1
Description
NDUFA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:45273]
Coordinates
chr22:42124875-42136714:+
Coord C1 exon
chr22:42124875-42125407
Coord A exon
chr22:42133040-42133090
Coord C2 exon
chr22:42136199-42136714
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTAAATTCTTCTCATCCCAGACA
3' ss Score
6.6
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGGACCGGGTCTACGTGCCCATGACAGAGCTCTGGCTGGACTGGTTCTGAGCCTCTAACACCCCCAAGACTCAGAACCGTGAAGAAAATCTTTCCAATAAATCCAAGAGTTGCTGCTGCTATAGGCCAGGCTGCCACCTTTCGGGGCCTCCGTCTTCAGACAAACCCAGCCTGGCTTCATCCACACTCCCTGTCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCGTGTGACCACAGTGGATTGTCTCTGGAGGGGCCCAAGGGGGCCCTGGCCACCCTTCTGACTGACTCGGTGCCAGGGGACAGACCAACGTCCCTCTCGTGCTGACAGCCGGGCCGCACCCTGGCATGAGGGCATTTACAGAAATGCTGGCGGAACTGCTGCCAGGGAGGCTGTAGGGTCCTCTGGCAAAAGAGGCCTCAGGTGGCTCCTCAGAGTGTCTGTGGTTCTCTGTCCCAGGCTGTTCCCTAAGAAGGTCTGCCCAGGACTCAG
Seq A exon
ACACTGCTCTAGTACCAGTCCTGGCTCTTTGCCCCAGGAGCAAATTAAAAG
Seq C2 exon
GTCACGACCCCCAGGAGACCTGGAGGACTGAATGCTGCTGCCCCCAAGGAGGAGGCTGCCGTCTTATCCCAGGAGGGAGAGCAGGTGAAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGCAGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACAGCCCGGGGCTTCGACTGAACGTCTCCAGCGTGGGTCCAACTGAGCAGCCATGGAGCACTGCAGAGTGGGAGGCAGCAGGGCAGGGAGGCAGTGCTGGAGGCTGGCTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCCATGTGTGAACAGACTGGGCCTCATCCTGGCCCCACCGACTTTGTGTGGACAGAGCCTGTTTCCCTGTCTGTGCAACACAGAACCTGCCTGATCTCACTGCTGGATCCCTCTTCTTCCTGCCAGGAAAATAAAAAGGTTCAAAAGGAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237037-'22-54,'22-50,29-54=AN
Average complexity
A_C2
Mappability confidence:
94%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCCTCTGGCAAAAGAGG
R:
CAGCAGCATTCAGTCCTCCAG
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains