HsaEX7104340 @ hg38
Exon Skipping
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
Coordinates
chr6:31589526-31592812:-
Coord C1 exon
chr6:31592791-31592812
Coord A exon
chr6:31589782-31589899
Coord C2 exon
chr6:31589526-31589633
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCCATGACCACCAGGCT
3' ss Score
5.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCAAAGGCCTGGCTACAAGTA
Seq A exon
GCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
Seq C2 exon
AACATCCTCAGCTAGGGGCTGGTACAGTCCTCCTCCTTCGGGCTGGATTCTATGCTGTCAGCTTTCTCTCTGTGGCCGTGGGCAGCACCGTCTATTACCAGGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475-'1-4,'1-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138951=Ig_2=PD(42.4=90.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGGCCTGGCTACAAGT
R:
ATTTGCCCTGGTAATAGACGGTG
Band lengths:
130-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains